| GATEWAY CHARTER ELEMENTARY SCHOOL | LEE | PK–04 | 1,102 | 70 | A |
| EDGEWOOD ACADEMY | LEE | PK–05 | 460 | 67 | A |
| TREELINE ELEMENTARY SCHOOL | LEE | PK–05 | 1,094 | 66 | A |
| TANGLEWOOD ELEMENTARY SCHOOL | LEE | PK–05 | 726 | 64 | A |
| ISLAND PARK HIGH SCHOOL | LEE | 09–12 | 263 | 63 | A |
| HARLEM HEIGHTS COMMUNITY CHARTER SCHOOL | LEE | KG–05 | 172 | 61 | A |
| VILLAS ELEMENTARY SCHOOL | LEE | PK–05 | 790 | 60 | A |
| CITY OF PALMS CHARTER HIGH SCHOOL | LEE | 09–12 | 102 | 59 | A |
| TICE ELEMENTARY SCHOOL | LEE | PK–05 | 558 | 58 | A |
| MANATEE ELEMENTARY SCHOOL | LEE | PK–05 | 809 | 58 | A |
| SAN CARLOS PARK ELEMENTARY SCHOOL | LEE | PK–05 | 671 | 58 | A |
| BUCKINGHAM EXCEPTIONAL STUDENT CENTER | LEE | PK–12 | 61 | 58 | A |
| COLONIAL ELEMENTARY SCHOOL | LEE | PK–05 | 760 | 57 | A |
| SOUTHWEST FLORIDA JUVENILE DETENTION CENTER | LEE | 06–12 | 36 | 57 | A |
| HEIGHTS ELEMENTARY SCHOOL | LEE | PK–05 | 1,129 | 56 | A |
| THREE OAKS ELEMENTARY SCHOOL | LEE | PK–05 | 989 | 53 | A |
| DUNBAR HIGH SCHOOL | LEE | 09–12 | 1,767 | 52 | A |
| ATHENIAN ACADEMY CHARTER SCHOOL | LEE | KG–08 | 325 | 52 | A |
| RIVERDALE HIGH SCHOOL | LEE | 09–12 | 2,103 | 50 | A |
| THREE OAKS MIDDLE SCHOOL | LEE | 06–08 | 1,066 | 48 | A |
| ALLEN PARK ELEMENTARY SCHOOL | LEE | PK–05 | 888 | 47 | A |
| ORANGEWOOD ELEMENTARY SCHOOL | LEE | PK–05 | 606 | 45 | A |
| FORT MYERS HIGH SCHOOL | LEE | 09–12 | 1,887 | 45 | A |
| ROYAL PALM EXCEPTIONAL SCHOOL CENTER | LEE | PK–12 | 133 | 45 | A |
| COUNTY WIDE EXCEPTIONAL CHILD PROGRAMS | LEE | PK–12 | 79 | 42 | A |
| GATEWAY CHARTER HIGH SCHOOL | LEE | 09–12 | 551 | 39 | A |
| ORANGE RIVER ELEMENTARY SCHOOL | LEE | PK–05 | 766 | 38 | A |
| EDISON PARK CREATIVE AND EXPRESSIVE ARTS SCHOOL | LEE | PK–05 | 406 | 37 | A |
| JAMES STEPHENS ELEMENTARY SCHOOL | LEE | PK–05 | 412 | 34 | A |
| LEE ADOLESCENT MOTHERS PROGRAM | LEE | 06–12 | 42 | 32 | A |
| SOUTH FORT MYERS HIGH SCHOOL | LEE | 09–12 | 1,854 | 32 | A |
| FRANKLIN PARK ELEMENTARY SCHOOL | LEE | PK–05 | 389 | 30 | A |
| CYPRESS LAKE MIDDLE SCHOOL | LEE | 06–08 | 785 | 27 | A |
| PAUL LAURENCE DUNBAR MIDDLE SCHOOL | LEE | 06–08 | 996 | 24 | A |
| CYPRESS LAKE HIGH SCHOOL | LEE | 09–12 | 1,524 | 22 | A |
| OAK HAMMOCK MIDDLE SCHOOL | LEE | 06–08 | 1,536 | 22 | A |
| SUCCESS ACADEMY | LEE | 06–12 | 133 | 19 | A |
| LEXINGTON MIDDLE SCHOOL | LEE | 06–08 | 1,110 | 18 | A |
| FORT MYERS MIDDLE ACADEMY | LEE | 06–08 | 664 | 15 | A |
| SIX MILE CHARTER ACADEMY | LEE | PK–08 | 788 | 14 | A |
| EARLY CHILDHOOD LEARNING SERVICES | LEE | PK–PK | | — insufficient data | B |
| FORT MYERS TECHNICAL COLLEGE | LEE | 09–12 | | — insufficient data | |
| GATEWAY ELEMENTARY SCHOOL | LEE | PK–05 | 787 | — insufficient data | F |
| LEE COUNTY ACCELERATION ACADEMIES | LEE | M–M | | — insufficient data | |
| LEE COUNTY JAIL | LEE | 07–12 | 1 | — insufficient data | A |
| LEE COUNTY VIRTUAL FRANCHISE | LEE | PK–12 | 1,283 | — insufficient data | F |
| LEE COUNTY VIRTUAL INSTRUCTION PROGRAM (DISTRICT PROVIDED) | LEE | KG–05 | | — insufficient data | |
| LEE VIRTUAL INSTRUCTION PROGRAM | LEE | KG–12 | | — insufficient data | |
| RAY V. POTTORF ELEMENTARY SCHOOL | LEE | PK–05 | 731 | — insufficient data | F |