| TIMBERLIN CREEK ELEMENTARY SCHOOL | ST. JOHNS | PK–05 | 1,119 | 54 | A |
| MILL CREEK ACADEMY | ST. JOHNS | PK–08 | 1,754 | 46 | A |
| R J MURRAY MIDDLE SCHOOL | ST. JOHNS | 06–08 | 644 | 42 | A |
| THE WEBSTER SCHOOL | ST. JOHNS | PK–05 | 437 | 40 | A |
| ST. AUGUSTINE PUBLIC MONTESSORI SCHOOL (SAPMS) | ST. JOHNS | KG–06 | 113 | 37 | A |
| TOCOI CREEK HIGH SCHOOL | ST. JOHNS | 09–12 | 1,306 | 35 | A |
| ST JOHNS COUNTY JUVENILE RESIDENTIAL | ST. JOHNS | 06–12 | 49 | 34 | A |
| KETTERLINUS ELEMENTARY SCHOOL | ST. JOHNS | PK–05 | 407 | 33 | A |
| LIFE WORK/PROJECT SEARCH | ST. JOHNS | 12–12 | 41 | 33 | A |
| ST. JOHNS COMMUNITY CAMPUS | ST. JOHNS | 09–12 | 40 | 33 | A |
| DEEP CREEK YOUTH ACADEMY | ST. JOHNS | 06–12 | 36 | 33 | A |
| OTIS A. MASON ELEMENTARY SCHOOL | ST. JOHNS | PK–05 | 671 | 30 | A |
| ST. JOHNS TECHNICAL HIGH SCHOOL | ST. JOHNS | 06–12 | 257 | 18 | A |
| SEBASTIAN MIDDLE SCHOOL | ST. JOHNS | 06–08 | 702 | 15 | A |
| PACETTI BAY MIDDLE SCHOOL | ST. JOHNS | 06–08 | 1,362 | 12 | A |
| DEAF ELEMENTARY SCHOOL (FSDB) | DEAF/BLIND | PK–05 | 70 | 8 | A |
| BLIND PK-8 SCHOOL (FSDB) | DEAF/BLIND | PK–08 | 62 | 8 | A |
| GAMBLE ROGERS MIDDLE SCHOOL | ST. JOHNS | 06–08 | 917 | 8 | A |
| ST. AUGUSTINE HIGH SCHOOL | ST. JOHNS | 08–12 | 1,794 | 7 | A |
| PEDRO MENENDEZ HIGH SCHOOL | ST. JOHNS | 08–12 | 1,482 | 6 | A |
| BLIND HIGH SCHOOL (FSDB) | DEAF/BLIND | 09–12 | 106 | 5 | A |
| GAINES ALTERNATIVE AT HAMBLEN | ST. JOHNS | 05–12 | 56 | 3 | A |
| DEAF HIGH SCHOOL (FSDB) | DEAF/BLIND | 09–12 | 159 | 3 | A |
| DEAF MIDDLE SCHOOL (FSDB) | DEAF/BLIND | 06–08 | 82 | 2 | A |
| ST JOHNS COUNTY TRANSITION PROGRAM | ST. JOHNS | KG–12 | 46 | 1 | A |
| CROOKSHANK ELEMENTARY SCHOOL | ST. JOHNS | PK–05 | 611 | — insufficient data | F |
| FIRST COAST TECHNICAL COLLEGE | ST. JOHNS | 09–12 | | — insufficient data | |
| HIGH SCHOOL III | ST. JOHNS | M–M | | — insufficient data | |
| MKY- HEAD START /DPP PK SCHOOL | ST. JOHNS | PK–12 | | — insufficient data | |
| OSCEOLA ELEMENTARY SCHOOL | ST. JOHNS | PK–05 | 580 | — insufficient data | F |
| PICOLATA CROSSING ELEMENTARY SCHOOL | ST. JOHNS | PK–05 | 866 | — insufficient data | F |
| PINE ISLAND ACADEMY | ST. JOHNS | PK–08 | 1,111 | — insufficient data | F |
| R. B. HUNT ELEMENTARY SCHOOL | ST. JOHNS | PK–05 | 582 | — insufficient data | F |
| ST. JOHNS COUNTY JAIL (DJJ) | ST. JOHNS | 09–12 | | — insufficient data | |
| ST. JOHNS VIRTUAL FRANCHISE | ST. JOHNS | KG–12 | 918 | — insufficient data | F |
| ST. JOHNS VIRTUAL INSTRUCTION PROGRAM K-8 | ST. JOHNS | KG–10 | 1 | — insufficient data | A |
| THERAPEUTIC LEARNING CENTER | ST. JOHNS | PK–PK | | — insufficient data | B |
| W. DOUGLAS HARTLEY ELEMENTARY | ST. JOHNS | PK–05 | 625 | — insufficient data | F |
| WARDS CREEK ELEMENTARY SCHOOL | ST. JOHNS | PK–05 | 750 | — insufficient data | F |